TogoVar Downloadable data for GRCh37

Last Updated: 2024/6/27

## Frequency data

For each dataset or its subgroup, a VCF file containing allele count/frequency and genotype count is available.


List of datasets and subgroups
-----------------

1.GEM Japan Whole Genome Aggregation (GEM-J WGA) Panel 

vcf/gem_j_wga: total count of GEM Japan Whole Genome Aggregation (GEM-J WGA) Panel 


2. Genome Aggregation Database (gnomAD) exomes

vcf/gnomad_exomes/all: Total count of the subpopulations below
vcf/gnomad_exomes/afr: African/African American
vcf/gnomad_exomes/amr: Admixed American
vcf/gnomad_exomes/asj: Ashkenazi Jewish
vcf/gnomad_exomes/eas: East Asian
vcf/gnomad_exomes/fin: European (Finnish)
vcf/gnomad_exomes/mid: Middle Eastern
vcf/gnomad_exomes/nfe: European (non-Finnish)
vcf/gnomad_exomes/remaining: Remaining individuals
vcf/gnomad_exomes/sas: South Asian


3. Genome Aggregation Database (gnomAD) genomes 

vcf/gnomad_genomes/all: Total count of the subpopulations below 
vcf/gnomad_genomes/afr: African/African American
vcf/gnomad_genomes/ami: Amish 
vcf/gnomad_genomes/amr: Admixed American
vcf/gnomad_genomes/asj: Ashkenazi Jewish
vcf/gnomad_genomes/eas: East Asian
vcf/gnomad_genomes/fin: European (Finnish)
vcf/gnomad_genomes/mid: Middle Eastern
vcf/gnomad_genomes/nfe: European (non-Finnish)
vcf/gnomad_genomes/remaining: Remaining individuals
vcf/gnomad_genomes/sas: South Asian


4. JGA-NGS dataset: reanalyzing individual-level genome sequence data in the NBDC Human Database/Japanese Genotype-phenotype Archive (JGA)

vcf/jga_ngs: Total count of JGA-NGS


5. JGA-SNP dataset: aggregated SNP-chip data in the NBDC Human Database/Japanese Genotype-phenotype Archive (JGA). 

vcf/jga_snp: Total count of JGA-SNP
vcf/jga_snp/bbj_riken: JGA-SNP dataset aggregated by disease and sex for 45 diseases.


6. Human Genetic Variation Database (HGVD)

vcf/hgvd: Total count of HGVD


7. ToMMo 8.3KJPN Allele Frequency Panel (8.3KJPN)

vcf/tommo: Total count of ToMMo 8.3KJPN