#!/bin/bash

#
# download  mouse reference genome
#  See https://asia.ensembl.org/info/data/ftp/index.html   
#  See https://ftp.ensembl.org/pub/release-109/fasta/mus_musculus/dna/README
#

#curl -O -C - https://ftp.ensembl.org/pub/release-109/fasta/mus_musculus/dna/Mus_musculus.GRCm39.dna.primary_assembly.fa.gz
#gunzip Mus_musculus.GRCm39.dna.primary_assembly.fa.gz 
#bgzip  Mus_musculus.GRCm39.dna.primary_assembly.fa
#samtools faidx Mus_musculus.GRCm39.dna.primary_assembly.fa.gz
samtools faidx Mus_musculus.GRCm39.dna.primary_assembly.fa
